PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016443360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 37610.4 Da    PI: 6.5284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016443360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09188235455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  XP_016443360.1 188 SHSLAERARREKISKKMKYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 235
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.97E-8182239No hitNo description
SuperFamilySSF474599.68E-17182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.085184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLSCGEMSVL ERQRAVLERL YSQSKQQLSS LPLQNLAQFN NLITEQMMGS LDIPIERMNE  60
NFTNFNMFGR EHDKAIIGFG FTNNWQETAR PSFSTVSNSS ITTVSPPPEK EIDTIVAPTG  120
NVVSTNKRKA EQFSEEEDCK IKRPQSEISE KSQRAASGNN SKENSKTSEV QKPDYIHVRA  180
RRGQATDSHS LAERARREKI SKKMKYLQEL VPGCNKVTGK AGMLDEIINY VQSLQKQVEF  240
LSMKLAALNP RLDLNTDNLF TKDFPSYMSN FPTIDVPTYS EYNLIQHQQM LPQRSENCLM  300
SFPEATSSPI SVVQQQPNFE TDLQSLFQCQ L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443360.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW32e-59HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A0V0HU251e-142A0A0V0HU25_SOLCH; Putative transcription factor bHLH64-like
STRINGPGSC0003DMT4000400211e-139(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.27e-57bHLH family protein